Package: cassandRa 0.2.0

cassandRa: Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks

Provides methods to deal with under sampling in ecological bipartite networks from Terry and Lewis (2020) Ecology <doi:10.1002/ecy.3047> Includes tools to fit a variety of statistical network models and sample coverage estimators to highlight most likely missing links. Also includes simple functions to resample from observed networks to generate confidence intervals for common ecological network metrics.

Authors:Chris Terry [aut, cre, cph]

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cassandRa.pdf |cassandRa.html✨
cassandRa/json (API)
NEWS

# Install 'cassandRa' in R:
install.packages('cassandRa', repos = c('https://jcdterry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jcdterry/cassandra/issues

On CRAN:

Conda:

4.48 score 3 stars 4 scripts 629 downloads 20 exports 54 dependencies

Last updated 10 months agofrom:9b1196235b. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 04 2025
R-4.5-winOKMar 04 2025
R-4.5-macOKMar 04 2025
R-4.5-linuxOKMar 04 2025
R-4.4-winOKMar 04 2025
R-4.4-macOKMar 04 2025
R-4.4-linuxOKMar 04 2025
R-4.3-winOKMar 04 2025
R-4.3-macOKMar 04 2025

Exports:%>%CalcHostLevelCoverageComputeCICoverageEstimatorCreateListObjectFitAllModelsFitBothMandCFitCentralityFitMatchingFitSBMmake_true_and_sample_webOptimise_SBMOptimiserPlotFitPlotRarefactionPredictLinksRarefyNetworkSortResponseCategoryTestAllModelsTestAUC

Dependencies:bipartitebootcliclustercodacolorspacecorpcorcpp11dotCall64dplyrfansifarverfieldsgenericsggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmunsellnetworknlmepermutepillarpkgconfigplyrpurrrR6RColorBrewerRcppreshape2rlangscalessnaspamstatnet.commonstringistringrtibbletidyrtidyselectutf8vctrsveganviridisLitewithr

cassandRa Vignette

Chris Terry

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Mar 04 2025.

Last update: 2019-06-26
Started: 2019-06-04